SubtiBank SubtiBank
ydfF [2020-04-09 16:08:24]
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ydfF [2020-04-09 16:08:24]

similar to transcriptional regulator ([SW|ArsR family])
locus
BSU_05390
pI
10.02
mw
25.47 kDa
protein length
226 aa Sequence Blast
gene length
681 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    585,868 586,548

    The protein

    Protein family

  • [SW|ArsR family]

    • [SW|Domains]

  • [SW|HTH arsR-type domain] (aa 1-92) (according to UniProt)

    • Structure

  • [PDB|2JSC] (from Mycobacterium tuberculosis, corresponds to aa 5 ... 87, 34% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C146 (ydfF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2144 NBRP B. subtilis, Japan]
  • BKE05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05390 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT, downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC
  • BKK05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05390 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT, downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC

    • References

  • 23504016